WEEK TWO -- CHAPTER 4: Atoms, Molecules and
Ions
Now it is time to get the heart of the matter--or more specifically,
how atoms form molecules and produce matter. We will begin by discussing
the theory of the atom, what particles make up the atom and differences
between different atoms. Remember, atoms are elements, they are
simply the smallest particle of an element that can be identified as that
element.
ATOMS--Dalton's
Atomic Theory
- All matter (including elements) is composed of atoms; each atom is
a very small, chemically indivisible particle
- the word 'atom' is from the Greek work "atmos" which means
"cannot be cut apart"
- elements are different because they are composed of different types
of atoms
- each type of atom has properties different from other atoms
- each type of atom has different properties, one of which is mass--the
mass of a carbon atom weighs 12 times that of a hydrogen atom
- compounds are composed of two or more atoms chemically combined in
fixed proportions
- for example, water, H2O, always occurs in a ratio of 2 hydrogens
: 1 oxygen--if the ratio were anything else it would not be water, H2O2
with a ratio of 2 : 2 is peroxide, certainly not water
- (law
of constant composition)
- chemical reactions rearrange the atoms
- by rearranging the atoms and their ratios of chemical combination,
the substances change
- chemical reactions cannot create or destroy matter, they can only rearrange
it, therefore all atoms in a chemical reaction product, must have occurred
within the reactants, albeit in a rearranged form
- (conservation
of matter)
- If two elements, A & B, form more than one compound, the masses
of B that can combine with a given mass of A are in a ratio of small whole
numbers
- Law
of Multiple Proportions

ATOMIC
PARTICLES:
Atoms consist of three subatomic particles:
- electrons
- electrons are negatively charged particles and their properties are
summarized in the following table
- protons
- protons are positively charged particles and their properties are summarized
in the following table
- neutrons
- neutrons have no charge and their properties are summarized in the
following table
|
Particle
|
Mass
(kg)
|
Mass
(amu)#
|
Charge*
|
| Electron |
9.10939 x 10 -31
|
0.00055
|
- 1
|
| Proton |
1.67262 x 10 -27
|
1.00728
|
+1
|
| Neutron |
1.67493 x 10 -27
|
1.00866
|
0
|
|
|
ELECTRONS:
- J.J. Thompson determined charge:mass ratio of the electron, e-,
in 1897
- the charge is -1
- the mass is 5.486 x 10 -4 amu or 9.10939 x 10 -31
kg
- Robert Millikan measured the charge of e-, 1909
- Thompson developed the "plum pudding" model of the atom
- this model had all atomic particles distributed evenly throughout the
volume of the atom
- Rutherford developed the "nuclear" model of the atom
- based upon his experiment which showed that atoms contains regions
of highly dense, positive material, called the nucleus
- the nucleus is very dense, 99.95% (or more) of the mass
of the atom is in the nucleus which has a diameter of approximately
10 -15 m-- a
matchbox of nucleus material would weigh 2½ billion tons! The density
is approximately 1013 - 1014 g/cm3.
- Rutherford discovered this through his famous experiment with gold
foil in which he shot alpha particles (fairly massive particles with a
positive charge) through thin gold foil and found that many particles were
strongly deflected and some bounced back at him! This could only happen
if the gold foil atoms contained massive centers that had a positive charge,
as exhibited in the figure below.

PROTONS:
- small, positively charged particles
- reside in the nucleus
- along with the neutron, make up most of the mass of the atom
- the number of protons is
what defines the type of a particular atom
NEUTRONS:
- small particles with no charge
- reside in the nucleus
- along with the proton, make up most of the mass of the atom
- a differing number of neutrons is what defines an "isotope"
of an atom
ATOMIC
NUMBER:
- the atomic number has the symbol, Z,
and is shown as a subscript to the element symbol
- the atomic number gives the number of protons in the nucleus (and the
number of electrons if the species is neutral) of a particular atom
- the atomic number defines a specific type of atom since each different
type of atom (representing each element) will have a different number of
protons in the nucleus
MASS
NUMBER:
- the mass number has the symbol, A,
and is shown as a superscript to the element symbol
- the mass number gives the mass of atom in amu, atomic mass number,
and is approximately equal to the number of protons plus the number of
neutrons
ELEMENTAL
SYMBOLS:
AXZ
Elemental symbols are typically written as above where X is the element
symbol with the mass number as a superscript and the atomic number as a
subscript.
ISOTOPES:
- Almost all atoms have "Isotopes"
- Elements with the same number of protons (atomic number) but differing
number of neutrons – isotopes are the same elements (atoms) with different
masses
- isotopes will have slightly different chemical and physical properties
due to the difference in mass, which can be very helpful in characterizing
substances
- for example, below are three isotope of carbon, C:
12C6 13C6 14C6
# p 6
6
6
# e 6
6
6
# n 6
7
8
- notice that the sum of # protons and # neutrons is equal to the mass
number
- because nearly all elements have one or more isotopes, the mass of
a naturally occurring element will be a "weighted average" of
all the isotopes which occur naturally, for example:
Carbon has two prominent isotopes which occur naturally (C-14 is present
in very small quantities and is radioactive so does not stick around
long and we won't count it here) shown below with their relative percent
abundance
C-12 12.0000 amu 98.9% abundant
C-13 13.0000 amu 1.1 % abundant
To determine the mass of naturally occurring carbon, we calculate the weighted
average of the two isotopes by summing (fractional abundance)(mass of isotope)
for each isotope:
mass C = (0.989)(12.0000) + (0.011)(13.0000) = 12.011 amu
ATOMIC
MASSES:
Because atoms are too small to weigh individually, we have had to develop
a relative mass scale for elements on the periodic table:
- amu
– atomic mass unit – is one such relative mass scale--one amu equals exactly
1/12 the mass of an atom of carbon-12 isotope
- rounded masses: C 12
amu
Mg
24 amu
Al
27 amu
F
19 amu
- masses can be accurately calculated using a mass
spectrometer but we won't worry about how that is done at this
time. All of our atomic masses we will use will come from published values
on a periodic table of the elements
to be discussed next.
PERIODIC
TABLE:
- a very good periodic table can be found on the internet at URL:  www.webelements.com.
In addition to the table itself, there is a great deal of information about
each element which is accessible at the above internet address
- there are a number of ways that the elements have been arranged--we
will use the "Modern Periodic
Table" which is derived from Mendeleev's version
of the organization of the elements.
- Modern Periodic Table
is based upon increasing atomic number of the elements and allows for organization
of the elements as well as grouping of the elements according to chemical
and physical properties
- Groups – are the vertical groupings or columns of elements in the table
- Periods – are the horizontal groupings or rows of elements in the table
- Three major groupings of types of elements:
- Metals -- generally hard, shiny,
dense, conductive with a shiny luster
- examples would be copper, lead, sodium
- know
which elements on the periodic table are metals -- in the periodic table
in the front of your text, metals are in blue
- Non-metals -- do not exhibit the
properties of metals, they are generally insulators, brittle, and often
gaseous
- examples would be chlorine, neon, sulfur
- know
which elements on the periodic table are non-metals -- in your text, non-metals
are orange
- Metalloids – have properties in
between those of metals and non-metals -- in your text, metalloids are
purple
- they are boron, silicon, germanium, arsenic, antimony, tellurium, astatine,
know
these
- There are assorted named sub-groupings which you should be familiar
with:
- Representative elements -- all Group A elements
- Transition elements – all Group B elements
Group # Name
IA alkali
metals
IIA alkaline
earth metals
VA nitrogen
group
VIA oxygen
group or chalcogens
VIIA halogens
VIIIA nobel
gases
- two numbers on the periodic table which you must become very
familiar with are:
- the atomic number--it is the smaller number and is always a whole number
- the mass number--it is the larger number and is a decimal number

MOLECULES
AND IONS:
Compounds and elements are pure substances which are the basic building
blocks of all matter The following chart should clarify the relationship
between pure substances, elements, compounds, atoms and molecules :

Notice that both elements and compounds are pure substances. Atoms are
the smallest particles that can be identified as a particular element,
and molecules are the smallest particles that can be identified as a particular
compound. Elements can also occur in a molecular form in which the same
type of elements (atoms) are chemically combined, such as two oxygen
atoms, O, which form molecular oxygen, O2, when chemically combined.
There are some elements, which you should know, that only occur
naturally (under normal conditions) in their molecular forms. They are
called diatomic molecules or,
sometimes, molecular elements
and they are: hydrogen, H2; nitrogen, N2; oxygen,
O2; fluorine, F2; chlorine, Cl2; bromine,
Br2; iodine, I2. Compounds are chemical
combinations of elements (atoms) of different types, such as water,
H2O or carbon dioxide, CO2. Let us look further at
the formation of compounds, both molecular
compounds and
ionic compounds.
MOLECULES:
- molecules are formed from chemical combinations of atoms--atoms are
combined in specific ratios to one another:
eg. water is H2O with a ratio of 2 : 1 in H : O
H2O2 is not water -- it is hydrogen peroxide
with a ratio of 2 : 2 in H : O
- molecular substances
are compounds formed between different non-metal elements
- the molecules that make up molecular substances are individual units
which act independently but are identical to one another
- ionic substances
are formed between metals and non-metals and are quite different
from molecular substances--we will discuss them in the next section
- masses of molecules or compounds are simply the summed masses of all
atoms or elements which combine to form a molecule or compound and are
represented by the chemical formula
eg. alcohol C2H6O
ether
C2H6O
vitamin C C6H8O6
sugar C12H22O11
saccharin C7H5NO3S
aspirin C9H8O4
cocaine C17H21NO4
- The formulas give the type,
ratio and
number of atoms
in the chemical combination but they say nothing of the actual structure,
for example, alcohol and ether are very different although they have the
same chemical formula. Their structural formulas (how the atoms
hook together), shown below, are different.
- The mass of a compound is the sum of the masses of all the atoms that
combine to form the compound:
Mass of vitamin C is 176.08 amu 6
C = 72.00 amu
8
H = 8.08 amu
6
O = 96.00 amu
C6H8O6
176.08 amu
- A structural formula will show not only type, ratio and number of atoms
in the chemical formula, but also which atoms are attached to which atoms

It would be wise, at this point, to obtain a model set of your own.
The ability to actually build a 3-dimensional model will enable you to
"see" the spatial nature of the compounds that we talk about.
IONS:
- ions are substances that have either a positive or negative charge
- ions come in two flavors
- cations
- have a positive charge of one or greater
- are generally derived from either metal elements or groups of elements
from which one or more electrons have been removed
- cations (monotomic) are always smaller
that the element from which they are derived
- anions
- have a negative charge of one or greater
- are generally derived from either non-metal elements or groups of elements
to which one or more electrons have been added
- anions (monotomic) are always larger
than the element from which they are derived
- monotomic ions are derived from single elements
- examples: Na
®
Na+ +
1e- (e-
is lost)
Ca
®
Ca2+ +
2e- (e-
's are lost)
Cl
+ 1e- ®
Cl- (e-
is gained)
O
+ 2e- ®
O2- (e-
's are gained)
- polyatomic ions are derived from groups of elements which are generally
non-metals
- examples: CO32-
PO43-
SO42-
NH4+
IONS
IN THE BODY
K+ and Mg2+ are predominantly inside the cell
and are important for nerve impulse transmission.
Na+ and Ca2+ and found outside the cell and are
important in the formation of bones, teeth, clotting, regulation of heart
rhythm and Na+ is important in nerve sensitivity and muscle control.
All 1st row transition metals except Ti are biologically active.
High Zn ion intake induces Cu ion deficiency and Cu and Fe ion deficiencies
can disrupt sleep as they are integral in the biological production of
neurotransmitters which affect brain activity.
- Ionic substances
- are formed between oppositely charged ions--cations and anions
- are held together by ionic bonds which are due to the electrostatic
attractions between the opposite charges
- ionic compounds are always neutral species formed by
combining the same
number of positive and negative charges:
for example: Mg2+ and Cl- produce MgCl2
not MgCl or MgCl3 or any other combination
Formulas
and Relative Masses:
- Because ions combine to form neutral ionic substances and elements
combine for form neutral molecular substances, if we know the relative
masses of substances which combine, we can determine their relative combining
ratio:
Ca cation and O anion are chemically combined in a 1:1 ratio
mass Ca combined 8.02
g
mass CaO after combination 11.22
g
mass O combined 3.20
g
therefore the relative mass of Ca : O is 8.02 /3.20 = 2.51 so Ca is 2.51
times heavier than O
- Now, if we also know the relative atomic masses of the elements, and
the masses of the elements that combine, we can calculate the ratio in
which they combine:
A compound containing only nitrogen and oxygen is analyzed. A sample weighing
2.20 g is found to contain 1.40 g of nitrogen. What is the formula of the
nitrogen oxide?
mass N combined 1.40
g
mass O combined 0.80
g
tot. mass of sample 2.20
g
Ratio of N : O is 1.40/0.80 = 1.75 so in this compound N is 1.75 heavier
than O
We know that the mass of N is 14.00 amu and the mass of O is 16.00 amu
and we also know that in our sample, the ratio of N/O must = 1.75
therefore 2
x mass of N =
28.00 amu = 1.75
mass
of O 16.00
amu
and the ratio or chemical
formula is N2O
Electrical
Properties of Solutions:
When substances dissolve in water, the basic particles from which they
are made (molecules in molecular substances and ions in ionic substances)
are separated by the water molecules. We will discuss this in much more
detail in Chapter 13--Solutions
- Molecular Substances
- The basic or smallest particle of a molecular substance is a molecule,
and molecules are always "neutral", hence, when molecular substances
dissolve, there are only neutral particles present.
- Because there are no charged particles in solution to be attracted
to a charged electrode, molecular substances are non-conductors
when dissolved in water
- Ionic Substances
- The basic or smallest particle of an ionic substance is an ion, and
ions are charged particles, hence, when ionic substances dissolve, there
are individual charged particles (both positive and negative) in the solution.
- Because there are both types of charged particles in the solution which
can be attracted to either a positive or a negative electrode, ionic substances
are conductors
when dissolved in water.
- If positive and negative electrodes are attached to a light bulb at
one end while the other ends are placed in a solution containing a dissolved
ionic substance, the light bulb will light up (this will not be the case
with a dissolved molecular substance because the individual particles are
neutral)
- this is due to the mobility of the individual positive and negative
ions in the solution which are attracted to the electrode of opposite charge
and complete the electrical circuit.
Sample
Problems:
- Fill* in the following chart with the appropriate values:
*answers are in blue
|
SYMBOL
|
CHARGE
|
# of Protons
|
# of Neutrons
|
# of Electrons
|
| 31P15
|
0
|
15
|
16
|
15
|
| 79Br35
|
0
|
35
|
44
|
35
|
| 55Mn25
|
+2
|
25
|
30
|
23
|
- the atomic number always gives the number of protons
- if the element is neutral (no charge), the number of electrons will
equal the number of protons
- if the element is charged the number of electrons and protons will
be different
- the numerical
value of the charge is the difference between the number of electrons and
the number of protons
- the sign
of the charge is positive if the number of protons is greater than the
number of electrons and negative if the number of electrons is greater
than the number of protons
- Indicate the correct formula for the ionic substance produced from
the following ions:
- Mg2+ & O2-
MgO
- Na+ & O2-
Na2O
- Al3+ & Cl-
AlCl3
- Ca2+ & CO32-
CaCO3
- notice that polyatomic ions such as CO32- are
treated as single units although they are formed from multiple elements
or atoms
- Na+ & CO32-
Na2CO3
- NH4+ & O2-
(NH4)2O
- in this case we set the unit -- the NH4 cation unit -- apart
by parentheses and indicate that we require two of these units by the subscript
"2" outside the parentheses
Notice that the charges of the ions are never written in the formula
and the formula always describes a neutral substance
- How many of each type of ion and each type of atom occurs in
the smallest identifiable unit of the ionic compound Al2(CO3)3?
- there are two aluminum ions (Al3+)
there are three carbonate ions (CO32-)--within each
carbonate ion there is one carbon and three oxygens
- there are two aluminum atoms
there are three carbon atoms
there are nine oxygen atoms
- What is the charge of each ion occurring in the following ionic substances:
- there are some rules which will help you here:
Group 1A elements (metals) always form +1 cations
Group 2A elements (metals) always form +2 cations
Group 6A elements (non-metals) generally form -2 anions
Group 7A elements (non-metals) generally form -1 anions
H generally forms a +1 cation
- KI K
= +1 & I = -1
- K is group 1A and I is group 7A and when they form a 1 : 1 ionic substance,
it is neutral
- CuO Cu
= +2 & O = -2
- we don't know the charge of Cu (in fact, Cu can have two different
charges +1 & +2!) but we do strongly suspect that O is -2, and
if O is -2 then Cu must be +2 in order for the CuO with a 1 : 1 ratio to
be neutral
- AlPO4 Al
= +3 & PO4 = -3
- we know that Al = +3 (Group 3A metal), but we don't know PO4
= ? PO4? must be a polyatomic anion (because
this is an ionic substance and Al is the cation so PO4
must be the anion)--since the ratio of Al : PO4 is 1 : 1, then
PO4 = -3
- Underline all correct isotopes of uranium (atomic #92) in the
following list:
234U92
238U92
238Np93
235U92
237U90
isotopes always have the same number of protons (which mean they are
defined as the same element) hence, have the same symbol & atomic
number but have different numbers of neutrons, hence different mass numbers
Below are listed some of the more common monotomic and polyatomic ions.
Know
the ion names, symbols and charges--you will need this information in the
next chapter.
Remember, each ion (whether monotomic or polyatomic) is considered an
individual unit and remains so during chemical reactions (at least at this
point on your path toward chemical knowledge!)
COMMON IONS
|
Positive
|
Negative
|
| Hydrogen |
H+
|
Hydroxide |
OH-
|
| Sodium |
Na+
|
Fluoride |
F-
|
| Potassium |
K+
|
Chloride |
Cl-
|
| Ammonium |
NH4+
|
Bromide |
Br-
|
| Silver |
Ag+
|
Iodide |
I-
|
| Copper(I) |
Cu+
|
Nitrate |
NO3-
|
| Copper(II) |
Cu+2
|
Nitrite |
NO2-
|
| Barium |
Ba+2
|
Perchlorate |
ClO4-
|
| Calcium |
Ca+2
|
Chlorate |
ClO3-
|
| Zinc |
Zn+2
|
Chlorite |
ClO2-
|
| Nickel |
Ni+2
|
Hypochlorite |
ClO-
|
| Magnesium |
Mg+2
|
Acetate |
C2H3O2-
|
| Cobalt(II) |
Co+2
|
Sulfide |
S-2
|
| Iron(II) |
Fe+2
|
Sulfate |
SO4-2
|
| Manganese(II) |
Mn+2
|
Sulfite |
SO3-2
|
| Mercury(II) |
Hg+2
|
Oxide |
O-2
|
| Aluminum |
Al+3
|
Carbonate |
CO3-2
|
| Iron(III) |
Fe+3
|
Phosphate |
PO4-3
|
| Chromium(III) |
Cr+3
|
Bisulfate |
HSO4-
|
| Cobalt(III) |
Co+3
|
Bicarbonate |
HCO3-
|
| |
|
Cyanide |
CN-
|
| |
|
Chromate |
CrO4-2
|
| |
|
Dichromate |
Cr2O7-2
|
Click here to go to Chapter 5 Chemical Formulas and Names